I'll post what I've learned. use this as my notebook. by markchiang (江奕賢)
2004年12月19日
2004年12月12日
results http://jing.cz3.nus.edu.sg/proteinfunc.html
Multi-class protein fold recognition using support vector machines and neural networks.
Support vector machines for predicting protein structural class.
Prediction of protein folding class using global description of amino acid sequence.
Dali fold classification structural neighbours, secondary structure alignment, 3D superimpose.
2004年12月7日
in Google (in English version)
You can query
145 Myrtle Ave. APT#BSMT. Fort Lee, NJ 07024
and it will give you a link to Yahoo! Maps & MapQuest
You can also query
145 Mertal Ave. APT#BSMT. Fort Lee, NJ 07024
it will correct it to
145 Myrtle Ave. APT#BSMT. Fort Lee, NJ 07024
for you.
mail address correction
http://www.semaphorecorp.com/cgi/form.html
MapQuest supports address correction.
simple mail address parser
http://www.cedar.buffalo.edu/adserv.html
2004年12月4日
2004年12月3日
2004年11月25日
http://www.cnblogs.com/catlog/archive/2004/03/23/3971.html
http://msdn.microsoft.com/library/default.asp?url=/library/en-us/secauthn/security/creating_custom_authentication_packages.asp
2004年11月24日
files in /var/lib/mysql/mysql are read only.
rm *
cp from /Knoppix/....
after copy the owner will become root.
chown mysql *
then, you can
GRANT ALL PRIVILEGES ON *.* TO mark@localhost
GRANT ALL PRIVILEGES ON *.* TO mark@Knoppix
2004年11月22日
ref: http://www.weiw.com/article/list.asp?id=605
select * from tab;
select * from cat;
How to install Oracle 8i client on XP?
(Windows XP Pro or Windows 2000 with Pentium 4 only)
Copy all the files/folders from the oracle 8i CD on to a folder on your c: drive.
Do NOT name this folder Oracle.
Change the name of the symcjit.dll file.
For Windows XP: Change from symcjit.dll to symcjit_disc.dll
For Windows 2000: Change the symcjit.dll to symcjit.dll.ori
The path to this file is:
C:\stage\components\oracle.swd.jre\1.1.7.30\1\Data Files\Expanded\jre\win32\bin
Now go back to your main c: drive directory and run the setup file.
Alternatively the 1507768 patch reference on Metalink will do the trick.
also, see http://www.intel.com/support/processors/pentium4/sb/cs-001674-prd483.htm
----------------------------
after installed the Oracle 8i client, you can use this command in command line to get into Oracle.
SQLPLUS SYSTEM@(DESCRIPTION=(ADDRESS=(PROTOCOL=tcp)(HOST=binfs.umdnj.edu)(PORT=1521))(CONNECT_DATA=(SERVICE_NAME=binfs">SYSTEM/binfs4lab@(DESCRIPTION=(ADDRESS=(PROTOCOL=tcp)(HOST=binfs.umdnj.edu)(PORT=1521))(CONNECT_DATA=(SERVICE_NAME=binfs)))
2004年11月21日
[IMFV]-x(3)-E-x(7,9)-[LVI]-x(2)-[ILVF]-x(8,10)-[VILA]-x-[YF]-x-[LVI]-x-G-x(4,9)-[IVL]-F-x-[IV]-x(3)-[TS]-G-x-[LVIM]-x(5)-[LMI]-x(7)-[YF]-x-L
I got this pattern using PRATT
G-x-[ILMV]-x(5)-[ILM]-D-R-E-x(15)-[AGT]-x(4)-[DEGNS]-[PQST]
with -PL 40 -PX 30 -FN 3 -FL 5 -FP 100
when I use 3motif to see the proteins matched these patterns,
I found my pattern is very interesting!
it target four points, two for sandwich's interlock, two for active sites.
Also, I found Shibata's idea is also interesting when I check interlocks with 3motif
1tf4: Y-x-F-x(10)-I-x-V-x(22)-V-x-I-x(20)-F-x-I
2004年11月19日
I've tried several ways, use DOS filename, use del \\?\C:\..., change name, etc. DIDN'T WORK!!!
finally, I delete it using a software, JRTS Delete FXP Files to delete it.
2004年11月17日
2004年11月10日
try signed and encrypt email in outlook express
I got free Personal Certificates from
https://www.thawte.com/cgi/enroll/personal/step1.exe
AND
http://certs.ipsca.com/CSB1Free/
first one not working.
second works fine.
umdnj sig works but enc not working.
yahoo, gmail, hotmail not working.
2004年11月7日
2004年10月23日
version, active information
tool to disable active function in windows server 2003
2004年10月20日
proteg http://www.spychecker.com/program/proteq.html
dekart http://www.spychecker.com/program/dekartlogon.html
rsa securid http://www.rsasecurity.com/
looks like this http://images.google.com/images?hl=en&lr=&q=+fob+rsa+securid+key
proteg http://www.spychecker.com/program/proteq.html
dekart http://www.spychecker.com/program/dekartlogon.html
rsa securid http://www.rsasecurity.com/
looks like this http://images.google.com/images?hl=en&lr=&q=+fob+rsa+securid+key
proteg http://www.spychecker.com/program/proteq.html
dekart http://www.spychecker.com/program/dekartlogon.html
rsa securid http://www.rsasecurity.com/
looks like this http://images.google.com/images?hl=en&lr=&q=+fob+rsa+securid+key
2004年10月15日
2004年10月6日
http://home.comcast.net/~natgoodman/Biological_Graph_Software.htm
2004年10月2日
http://www.cbs.dtu.dk/services/MatrixPlot/distmatr/index.html
You'll be able to get a MatrixPlot format file like this http://www.cbs.dtu.dk/services/MatrixPlot/dataformat/mpformat.html
then you can grep info you want from it.
2004年9月29日
maybe we can use http://i.moltalk.org/
instead of CSU
cause, sometimes CSU is not working.
Also, Moltalk will be quicker and more details.
choose "Find interface between two chains of a structure" in http://i.moltalk.org/
enter the pdb code,
when select chains, just select the same chain twice.
Done.
http://balabio.dcs.gla.ac.uk/tops/
to generate
http://www3.ebi.ac.uk/tops/ExplainDetailed.html
and you can easily compare things like
1bia
1gh4
2004年9月22日
2004年9月15日
HBPLUS, which is distributed with LIGPLOT: http://www.biochem.ucl.ac.uk/bsm/ligplot/ligplot.html
There's also HBOND, which comes with the JOY package:
http://www-cryst.bioc.cam.ac.uk/~joy/
they are free, but they all need Academic License which I can't apply individually, has to apply by UMDNJ.
for example, I want to know the H-Bonds in protein 1a2p, I go to
http://bioportal.weizmann.ac.il/oca-bin/csu?PDB_ID=1a2p
I found there's four sheet strands for each chain.I click on "Strand 1" on "A sheet" (residue 96-99)
I'll go to this page
from this page, if there's a "+" sign under HB colume, I know there's a H-Bond.
2004年9月6日
free
http://game.marketwatch.com/Home/default.asp
fee need
http://www.stocktrak.com/
2004年9月5日
this one as whole taiwan
http://921farmers.cultureworld.org/image/TaiwanNo1.jpg
+
this one for more detail image
http://iws.csrsr.ncu.edu.tw:8080/JSP/CSRSR/homepage.jsp?UserId=guest
+
this one for very very detail image
http://addr.tcg.gov.tw/
http://www.globalsecurity.org/military/world/taiwan/taipei.htm
this one as black and white detail
2004年8月24日
2004年8月17日
http://aspnet.4guysfromrolla.com/articles/051403-1.2.aspx
TreeView (@msdn)
2004年8月15日
2004年8月11日
http://www.screenbooks.net/jorr/js/
Creating a Pageable, Sortable DataGrid using ASP.NET
http://msdn.microsoft.com/library/default.asp?url=/library/en-us/dnaspp/html/aspnet-pageablesortable.asp
2004年8月5日
http://www-alis.tokyo.jst.go.jp/HOWDY/
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?CMD=search&DB=snp
http://hgvbase.cgb.ki.se/ (can't get final result 04/08/05)
2004年8月4日
2004年8月3日
http://eutils.ncbi.nlm.nih.gov/entrez/eutils/soap/eutils.wsdl
to check pubmed data
ex:
Feasibility of simplifying balloon mitral valvuloplasty by obviating left-sided cardiac catheterization using on-line guidance with transesophageal echocardiography.
PMID: 12796174
1. use run_eSearch
db=pubmed
term=Feasibility+of+simplifying+balloon+mitral+valvuloplasty
field=titl
you'll get PMID: 12796174
http://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pubmed&term=Feasibility+of+simplifying+balloon+mitral+valvuloplasty&field=titl
2.use run_eSummary
db=pubmedid=12796174
you'll get:
Feasibility of simplifying balloon mitral valvuloplasty by obviating left-sided cardiac catheterization using on-line guidance with transesophageal echocardiography.
http://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&id=12796174&retmode=xml
2004年7月27日
http://geneticassociationdb.nih.gov
use this to transfer access data to mysql
http://www.kitebird.com/articles/access-migrate.html
use this to search pubmed through soap interface (XML,wsdl)
http://eutils.ncbi.nlm.nih.gov/entrez/query/static/esearch_help.html
2004年7月22日
http://lgsun.grc.nia.nih.gov/ANOVA/bin/login.cgi
http://bioinformatics.uams.edu/page/
Use this to translate gene identifier
http://discover.nci.nih.gov/matchminer/html/MatchMinerInteractiveLookup.jsp
Use EXCEL to add color to updowngene.txt and use this to get it in pathway (colored)
http://www.genome.ad.jp/kegg-bin/mk_point_multi_html
I'm thinking about use pathway data and microarray data to form an automatic functional genetic discoverer. (use the same algorithm I do for Dr. Gu)
2004年7月13日
these tools might help.
ex:
String http://string.embl.de/
input sequence, get "predict functional associations proteins/genes"
supported by microarray, textmining, Co-occurrence, etc.
IntAct http://www.ebi.ac.uk/intact/index.html
input gene, it will give you proteins interact with the given gene.
supported by Experiments.
InterDom
input sequence, it will give you putative domain interactions
for example, it will give you some domains which has complexes with domain in given sequence (derived from PDB), or has protein interactions with domain in given sequence (derived from DIP).
I done some research on Database of Interacting Proteins (DIP)
ex: I want to know what proteins interact with P53
enter P53 in NodeID or Name field in this page
you will get DIP nodes for p53 in human and mouse
(DIP:368N, DIP:369N, DIP:5978N, DIP:24202N, etc)
in each DIP node, you can click on the "graph" link at top right corner
you'll see what other proteins interact with P53.
it also provides links to related information in
PDB, NCBI, Prosite, Smart, InterPro databases.
another one similar to this
2004年6月24日
2004年6月22日
SuperCluster Cluster systems, Science softwares.
2004年6月14日
2004年6月10日
BartPE
Tutorial (chinese)
Snapshot of Knoppix, BartPE, MacOSX on win32, etc.
2004年6月9日
Here's the answer: http://faq.gotomyvnc.com/fom-serve/cache/76.html
Might because of "Fast User Switching"
2004年5月13日
http://home.wanadoo.nl/mijnwww/top10.html
for my cell phone, just give it the url to that gif file,
then select "save", done.
but can't distribute to others.
use this to find a free web to sms provider
http://www.textmefree.com/US_Only/
2004年5月12日
here's the solution:
http://www.wown.com/j_helmig/wxprcons.htm
2004年5月3日
http://cs.colgate.edu/faculty/nevison/cs201web/lectureNotes/transistorlogic.ppt
you can use "Simcir the circuit simulator" or xLogicCircuits to play with gates.
you can try to implement adder or Flip-Flop as follow: http://www.brunel.ac.uk/~castjjg/hndcfund/material/logic/part5.htm
http://jscheme.sourceforge.net/jscheme/src/jlib/demo/Demorunner.html
try this:
(define (count lis ele)
(cond((null? lis) 0)
((eq? (car lis) ele) (+ 1 (count (cdr lis) ele)))
(else (count (cdr lis) ele)))
)
)
(count '(a b c d a a) 'a)
2004年4月27日
我手上用的是Sonic MyDVD和Adobe Premiere Pro
另外兩個 也蠻有名的 給你參考
這幾套其實都不需要經過NERO 都可以直接燒進DVD
Sonic MyDVD
我的DVD附的是這一套 蠻方便的 功能也不錯 隨便做做看起來都蠻炫的
如果不需要編輯 通常我會用這套
Adobe Premiere Pro
這...你應該跟我一樣還蠻習慣adobe的東西吧 :p
這套專門剪接用的 剪接完 可以直接燒錄成DVD
不過 對檔案格式的支援比較遜一點 可先用TMPGEnc(不是上面的DVD Author, 名字只叫TMPGEnc)轉
除非需要複雜的編輯工作 要不然我不太想找罪受
用這套可能事前的轉檔工作就快要我的命了
TMPGEnc DVD Author
這是轉檔界最有名的啦 支援格式最多 轉檔效率最好
現在他出了DVD燒路軟體
轉出來的DVD檔案最小 而且 還可以直接編輯vob檔 別的好像都沒有支援 得先轉回avi or mpg之類的 才能編輯
DVD威力製片
這是國內比較有名的吧 我是沒用過 不過 應該比較大眾化 比較好操作吧
2004年4月22日
P4 chips come with a clever step down facility which allows the CPU to slow down when it gets hot. The CPU will run slower the hotter it gets. The theory is that the CPU will never burn out even without a heatsink/fan. It will just run run at an unbelievably slow pace. ref
I test mine by using MBM5, idle 44c full 57c.
(Full: run Hot CPU Tester Pro 4 Lite)
pc keep rebooting might because this:
http://www.sssun.idv.tw/abit/
software to test pc (burn in test)
http://www.upgradeware.com/tw/support/tools.htm
http://www.7byte.com/index.php?page=download
http://www.benchmarkhq.ru/english.html?/be_cpu.html
http://www.softking.com.tw/soft/review_eng.asp?fid2=113
http://www.1bits.com/doc/200207/review63.shtml
you can give it some rules, and it can calculate results based on these rules.
ex:
give it
0! = 1
n! = n * (n-1)!
asking
4!, it will give you 4!=4*3!=4*3*2!...=result.
give it
A=>B
B=>C
then it'll tell you A=>C
tutorial in chinese
Prolog
how it works
2004年4月15日
you can use this
http://alces.med.umn.edu/dbmotif.html
if you want to search the motif in some sequences in your hand, use this:
http://alces.med.umn.edu/webmotif.html
This one was pretty good
http://www.ccsee.com/trans/tw/default.asp
but now it doesn't work due to disk full.
alt: this one
http://www.excite.co.jp/world/chinese/web/
if that one doesn't work either, use this one.
http://babelfish.altavista.com/
2004年4月14日
Radar http://www.ebi.ac.uk/Radar/
REP http://www.embl-heidelberg.de/~andrade/papers/rep/search.html
2004年4月7日
$ans=`wget -O- "http://www.marshallsonline.com/search_results_state.aspx?state=nj" | grep "3a56a5"`;
@ans2=split(/<td/,$ans);
foreach $ans2(@ans2){
if ($ans2=~/left/){
($f1,$f2,$f3,$f4,$f5)=split(/<br>/,$ans2);
$f1=~s/^.*<.*>//g;
if ($f4=~/Phone/){
$f3=~s/,/\t/g;
$f3=~s/([\w]) ([\d])/$1\t$2/;
printf("$f2\t$f3\n");
}else{
$f2=~s/,/\t/g;
$f2=~s/([\w]) ([\d])/$1\t$2/;
printf("$f1\t$f2\n");
}
}
}
2004年4月6日
my license key is in ysc212@cs.nyu.edu mailbox
wsdl
tutorial and source code using aspx
but I still need UTF-8 encoding example.
2004年3月24日
Phytochemical and Ethnobotanical Databases
Example:
You can search plants which has anticancer activity.
2004年3月7日
then, we can use this xsl to display it.
<?xml version='1.0' encoding="Big5" ?>
<xsl:stylesheet xmlns:xsl="http://www.w3.org/TR/WD-xsl">
<xsl:template match="/">
<HTML>
<HEAD><TITLE>天氣預報</TITLE></HEAD>
<BODY>
<xsl:apply-templates select="ExtendedWeatherInfo"/>
</BODY>
</HTML>
</xsl:template>
<xsl:template match="ExtendedWeatherInfo">
<TABLE border="1" cellspacing="0">
<xsl:apply-templates select="Info"/>
</TABLE>
</xsl:template>
<xsl:template match="Info">
<TR>
<TD><xsl:apply-templates select="Location"/></TD>
<TD><xsl:apply-templates select="IconIndex"/></TD>
<TD><xsl:apply-templates select="Temprature"/></TD>
<TD><xsl:apply-templates select="Forecast"/>
<xsl:eval language="VBScript">Celsius(this)</xsl:eval>
<xsl:script language="VBScript"><![CDATA[
Function Celsius(fDegrees)
Celsius = (fDegrees - 32) * 5 / 9
End Function
]]>
</xsl:script>
</TD>
</TR>
</xsl:template>
<xsl:template match="Location"><xsl:value-of/></xsl:template>
<xsl:template match="IconIndex">
<xsl:choose>
<xsl:when test=".[value() $gt$ 30]">晴</xsl:when>
<xsl:when test=".[value() $gt$ 20]">陰</xsl:when>
<xsl:when test=".[value() $gt$ 10]">雨</xsl:when>
<xsl:when test=".[value() $gt$ 5]">雪</xsl:when>
<xsl:otherwise>去死啦</xsl:otherwise>
</xsl:choose>
</xsl:template>
<xsl:template match="Temprature"><xsl:value-of/></xsl:template>
<xsl:template match="Forecast"><xsl:value-of/></xsl:template>
</xsl:stylesheet>
<HTML>
<HEAD>
<TITLE>Simple demo of Microsoft XSL Processor</TITLE>
</HEAD>
<XML id="source1" src="http://tw.news.yahoo.com/rss/technology"></XML>
<XML id="source2" src="http://news.com.com/2547-1_3-0-20.xml"></XML>
<XML id="source3" src="http://www.nws.noaa.gov/alerts/ny.rss"></XML>
<XML id="style" src="C:\Documents and Settings\Owner\Desktop\technology.xsl"></XML>
<SCRIPT FOR="window" EVENT="onload">
tech.innerHTML = source1.transformNode(style.XMLDocument);
cnet.innerHTML = source2.transformNode(style.XMLDocument);
weather.innerHTML = source3.transformNode(style.XMLDocument);
</SCRIPT>
<BODY>
<P STYLE="font-size:10pt; font-family:Verdana; color:gray">
<B>This demo shows the use of data islands for loading XML source and
XSL style sheets and inserting the transformed result into the Web page.</B>
</P>
<DIV id="tech"></DIV>
<DIV id="cnet"></DIV>
<DIV id="weather"></DIV>
</BODY>
</HTML>
<?xml version="1.0" encoding="UTF-8"?>
<xsl:stylesheet version="1.0"
xmlns:xsl="http://www.w3.org/1999/XSL/Transform"
exclude-result-prefixes="xsl">
<xsl:output method="xml" omit-xml-declaration="yes" indent="yes"/>
<xsl:template match="/">
<div>
<xsl:apply-templates select="rss/channel"/>
</div>
</xsl:template>
<xsl:template match="rss/channel">
<xsl:variable name="link" select="link"/>
<xsl:variable name="description" select="description"/>
<xsl:variable name="image" select="image/url"/>
<xsl:if test="$image">
<img src="{$image}" style="float: right; margin: 2px;" />
</xsl:if>
<h3>
<a href="{$link}" title="{$description}"><xsl:value-of select="title" /></a>
</h3>
<hr/>
<ul><xsl:apply-templates select="item"/></ul>
</xsl:template>
<xsl:template match="item">
<xsl:variable name="item_link" select="link"/>
<xsl:variable name="item_title" select="description"/>
<li>
<a href="{$item_link}" title="{$item_title}"><xsl:value-of select="title"/></a>
</li>
</xsl:template>
</xsl:stylesheet>
2004年3月4日
TextAreaPro V1.0 Demo
Demo Supporting floating images, text, tables; also support sounds, video; save to local, server.
for creating thumbnails, I think I'll use ASP.NET to do it.
How To: Creating Thumbnail Images
Image.GetThumbnailImage on microsoft
public class MakeThumbnail : System.Web.UI.Page
{
private void Page_Load(object sender, System.EventArgs e)
{
string file = Request.QueryString["file"];
System.Drawing.Image image = System.Drawing.Image.FromFile(Server.MapPath(file));
System.Drawing.Image thumbnailImage = image.GetThumbnailImage(64, 64, new System.Drawing.Image.GetThumbnailImageAbort(ThumbnailCallback), IntPtr.Zero);
MemoryStream imageStream = new MemoryStream();
thumbnailImage.Save(imageStream, System.Drawing.Imaging.ImageFormat.Jpeg);
byte[] imageContent = new Byte[imageStream.Length];
imageStream.Position = 0;
imageStream.Read(imageContent, 0, (int)imageStream.Length);
Response.ContentType = "image/jpeg";
Response.BinaryWrite(imageContent);
}
public bool ThumbnailCallback()
{
return true;
}
// ... non-applicable infrastructure code removed for clarity ...
}
2004年3月3日
examples' here
just need to combine functions in those websites.
2004年2月26日
I finally find the tool: Sonic Stylus Studio
with very very good Video Demo
2004年2月21日
this one sometime not working
2004年1月31日
Finally, it works.
I followed this tutorial and find the problem.
I need to use wsdl to generate the cs file first,
then use csc to compile the cs file to dll file,
AND, for the example in tutorial, they HAVE TO BE in bin/ directory! (OR, it will not work!)
Three importent lines:
wsdl.exe /l:CS /n:WService /out:bin/GetSuppliers.cs http://localhost/suppliers.asmx?WSDL
csc /t:library /out:bin\GetSuppliers.dll bin\GetSuppliers.cs /reference:System.dll,System.Data.dll,System.Web.dll, System.Web.Services.dll,System.XML.dll /optimize
< %@ Import Namespace="WService" % > <=no space between "<" and "%"
2004年1月30日
test on windows 2000
when trying to install .net sdk download
it want me to install "Microsoft Data Access Components" first. download
I think shangker will like this tutorial
I've tried following example.
------------ save this to http://192.168.111.128/DotNet/test.asmx--------------
<%@ WebService Language="c#" Class="FirstWebService" %>
using System;
using System.Web;
using System.Web.Services;
public class FirstWebService {
[WebMethod]
public string HelloWorld(string lcName) {
return "Hello World, " + lcName;
}
[WebMethod]
public decimal AddNumbers(decimal lnNumber1, decimal lnNumber2) {
return lnNumber1 + lnNumber2;
}
/*
[WebMethod]
public DateTime GetServerTime() {
return DateTime.Now;
} */
}
--------------end of test.asmx------------------
then connect to
http://192.168.111.128/DotNet/test.asmx
you can see things mentioned in this tutorial
if you want WSDL, you can connect to: http://192.168.111.128/DotNet/test.asmx?wsdl
this is the easist way to create web services I've ever seen.
this tool can help you to test it.