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New York, New York, United States
我叫江奕賢啦

2003年9月28日

I was thinking about a tool can save my informations in nested tree structure.
I think this is the answer.
http://www.basil28.com/tree/xmltree.htm
which use xml and flash to do it. and can easily add, delete, nodes with title, link. and can change style easily.
and can save and open xml files.

2003年9月27日

I'm trying to test exon intron prediction software,
when tested in GeneMark, I got a bad result.
then I found NetGene2 on google.
and have a very good result, and useful information (ex:calculations).
and also has paper discribing it's algorithm.

maybe I can get values from NetGene2 and do some improvement.
================
they also has tool, GenePublisher, to let you input microarray data, and get microarray analysis report. Just like what I did for my uncle.
================
in BINF5230, Fall 2002, we've use Grail to predict exon & intron.
now, it has Grail-1.3
in "Grail 2 Exons", you can check "Clusters", and you'll have almost all the possible position where correct exon intron will be.

maybe I can get all the possible position from Grail and then check each point using my own algorithm.

2003年9月24日

NCBI現在有個叫OMIM的database (可得到疾病相關gene, protein之資訊)
你在NCBI查到gene之後 按他右邊的links 如果有OMIM的話 代表他是已知疾病相關的gene
按過去之後如果右邊有GeneTests 代表可能有laboratories that offer clinical testing for this disorders.
按進去就可看到有提供此服務的實驗室聯絡方式

可幫uncle試試看這個database

2003年9月21日

如何知道microsoft & yahoo等大公司內部資料
如: 他們的server可能架構, 他們的程式可能的演算法

ex:查詢IBM有哪些專利

免費查詢美國專利
http://www.uspto.gov/patft/

2003年9月19日

2003年9月16日

how to get biomedical datasets
http://www.cdc.gov/nchs/
http://www.cdc.gov/nchs/datawh.htm#Data%20base%20searches
http://www.cdc.gov/nchs/datawh/ftpserv/ftpdata/ftpdata.htm
http://www.cdc.gov/nchs/about/major/nhanes/nh3data.htm#Data%20Files%201a

2003年9月4日

Q:use script to do telnet stuff
A:two ways,
1.Use "expect" command example
2.Use perl's Net::Telnet example additional info